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Changelog

0.11.1

Oct 29, 2024

  • replace emc (Extinction to Mass Coefficient) to mec (Mass to Extinction Coefficient)

0.11.0

Oct 29, 2024

  • add ifs emc to netcdf files and emc for different aerosol types and ifs to map json files

0.10.6

Oct 25, 2024

  • fix CI

0.10.5

Oct 25, 2024

  • change aer_ifs.json structure
  • move config logic to workflow part

0.10.4

Oct 19, 2024

  • change lr_ifs.json to aer_ifs.json

0.10.3

Oct 18, 2024

  • use time_steps option (6 by default, for working with 30 minutes batch files)

0.10.2

Oct 18, 2024

  • make 30 minutes batch L2b files

0.10.1

Oct 10, 2024

  • preserve time dimension in L2B files

0.10.0

Oct 10, 2024

  • revisit CLI: two commands
    • apro run (formerly aprocess: run standard workflow)
    • apro l2b (creates L2B files out of AP files)

0.9.7

Oct 3, 2024

  • round up values in climatology files

0.9.6

Oct 2, 2024

  • fix time unit in climatology files
  • fix typo in documentation

0.9.5

Oct 2, 2024

  • write time as int in climatology files

0.9.4

Oct 2, 2024

  • fix typo

0.9.3

Oct 2, 2024

  • add Z as suffix to time in climatology json files

0.9.2

Oct 1, 2024

  • change snr calculation
  • fix build
  • sort climatology by time

0.9.1

Sep 30, 2024

  • fix pip version number

0.9.0

Sep 30, 2024

  • Add aod and lidar_ratio to climatology files

0.8.4

Sep 27, 2024

  • Add lidar_ratio to maps.json

0.8.3

Sep 26, 2024

  • Fix time precision (double instead of float)

0.8.2

Sep 25, 2024

  • Fix time precision (double instead of float)

0.8.1

Sep 24, 2024

  • Fix progress bar visibility in CLI climatology
  • Only read relevant variables in CLI maps and calendar
  • Fix some links in documentation

0.8.0

Sep 23, 2024

  • Use mkdocs for documentation
  • Compress all variables when writing AP files
  • New logo
  • Update README.md

0.7.2

Sep 21, 2024

  • Update quality flags attrs type for CF compliance.

0.7.1

Sep 21, 2024

  • Update dependencies
  • Fix documentation
  • Makes climatology much faster by using dask

0.7.0

Sep 20, 2024

  • Support Python 3.12.
  • Replace tqdm with rich

0.6.5

Sep 20, 2024

  • Work on CF compliance (write time as days).

0.6.4

Sep 16, 2024

  • Work on CF compliance (missing altitude direction and time units).

0.6.3

Nov 10, 2023

  • Fix time conversion warnings in the map processing.

0.6.2

Nov 9, 2023

  • Enable multiprocessing for climatology computation.
  • Fix bug in map processing due to the removal of time conversion warnings (0.6.1).

0.6.1

Nov 9, 2023

CLI improvements: - Remove time conversion warnings in map computation. - Add indicator in progress-bar when using multiprocessing.

0.6.0

Nov 3, 2023

  • Support python3.11.
  • Fix relative paths issues occurring when the CLI is triggered without a local copy of the repository (via module load on ecFlow).

0.5.15

Nov 3, 2023

  • Fix resampling issue [TypeError: Grouper.__init__() got an unexpected keyword argument 'base'] obtained with pandas v2.0.0. See xarray issue #8282.
  • Add workers option in the CLI.

0.5.14

Mar 24, 2022

  • Explicitly add numba to the list of required dependencies for solving some installation issues.

0.5.13

Dec 2, 2022

0.5.12

Nov 16, 2022

  • Fix relative path of the config file read in the CLI to make the command work properly anywhere.

0.5.11

Nov 15, 2022

  • Move CLI within the package directory to make aprocess available everywhere.
  • Add pipx installation instructions in documentation.

0.5.10

Nov 10, 2022

  • Create a aprocess command (calling cli/aprocess.py).
  • Update Typer (from 0.4.0 to 0.7.0).
  • Use Path library.
  • Clean up imports.

0.5.9

Oct 27, 2022

  • Support Python 3.10.

0.5.8

Jul 15, 2022

  • Fix climatology computation bug, which was returning only a single profile instead of seasonal profiles.
  • New configuration file cfg.json with a new exclude_stations_id_from_climatology key for removing some stations with changing altitude.
  • Add a try/except block in the climatology computation for excluding stations with non-monotonic global indexes.

0.5.7

Jul 14, 2022

  • Remove time duplicates if they exist in the L2 file (e.g., L2_0-380-61_A20220708.nc) that were causing conflicts when trying to read multiple files for computing the climatology with xarray.open_mfdataset.

0.5.6

Jul 13, 2022

  • Fix a bug in the PBL detection that was triggering an IndexError when no valid point was found in a profile (e.g., L2_0-20000-003590_A20220701.nc).
  • Improve the previous clouds detection fix, by checking if any valid point was found in the processed profile.

0.5.5

Jul 13, 2022

  • Fix a bug in the clouds detection that was triggering an IndexError when no valid point was found in a profile (e.g., L2_0-20000-003590_A20220701.nc).

0.5.4

Jul 12, 2022

  • Fix a bug in the clouds detection that was triggering an IndexError when data presented consecutive equal values vertically (e.g., L2_0-20000-006432_A20220701.nc where large squares in the altitude are filled with NaN values).

0.5.3

Jun 20, 2022

  • Update pydata-sphinx-theme minimum required version from 0.7.2 to 0.9.0 for supporting dark mode 🌘.
  • Update black minimum required version from 21.12b0 to 22.3.0.

0.5.2

Apr 13, 2022

  • Change max valid AOD value used to define outliers from 0.5 to 2.0.

0.5.1

Apr 13, 2022

  • Add compat='override' option to the update_climatology() function to resolve potential merging issues.

0.5.0

Apr 12, 2022

  • Add --update-climatology option in the CLI. This option creates seasonal extinction profiles in one climatology JSON file per station after reading all available AP files.

0.4.2

Apr 12, 2022

  • Fix --from option in CLI.

0.4.1

Jan 31, 2022

  • Add alc_parameters.json file in CLI config directory for overwriting dataflow parameters for different ALC types.
  • Add --no-progress-bar option in CLI.

0.4.0

Jan 27, 2022

  • Add test suite using pytest and pytest-cov.

0.3.5

Jan 18, 2022

  • Enables reading of original CEDA archive files with variables having dimensions as (altitude, time) instead of (time, altitude).

0.3.4

Dec 14, 2021

  • Exit forward inversion loop as soon as a np.nan value is found in the profile.
  • Work on documentation.

0.3.3

Dec 13, 2021

  • Fix poetry warning when publishing to pip.

Note

After further investigation, the reported issue with the installation of aprofiles with pip was due to the use of the -e option:

  • pip install . works
  • pip install . -e fails

0.3.2

Dec 13, 2021

  • Use multiprocessing instead of multithreading.

0.3.1

Dec 9, 2021

  • Use max altitude as reference altitude when using the forward inversion method.

0.3.0

Dec 9, 2021

Note

This version has been removed from pypi. Use 0.3.1 instead.

  • Fix major bug in the forward inversion method (use of molecular transmission instead of aerosol transmission).
  • Use max altitude as reference altitude when using the forward inversion method.
  • Add a simulator module for computing attenuated backscatter profiles from a given extinction profile model.
  • Remove outliers in the standard workflow called by the CLI.

0.2.6

Dec 8, 2021

  • Fix Attenuated Backscatter units from µm⁻¹.sr⁻¹ to Mm⁻¹.sr⁻¹. This bug only impacted figure legends.

0.2.5

Dec 7, 2021

  • Move Typer from development dependencies to default dependencies.

0.2.4

Dec 6, 2021

  • Remove email address from scripts.
  • Change CLI option (instrument-types to instruments-type).
  • Add show_fig and save_fig options to the plotting function.
  • Replace E-6 m⁻¹ by µm⁻¹ in figures.
  • Update README and documentation figures.

0.2.3

Dec 3, 2021

  • Rename run directory to cli.
  • Rename aprorun.py to aprocess.py.
  • Add CLI documentation.

0.2.2

Nov 30, 2021

0.2.1

Nov 29, 2021

  • Add CLI for facilitating deployment on ecFlow.

    Examples: 

    ./run/aprorun.py --date 2021-09-09
./run/aprorun.py --from 2021-09-09 --to 2021-09-10
./run/aprorun.py --today
./run/aprorun.py --today --yesterday

0.2.0

Nov 19, 2021

  • Initial release

0.1.0

Sep 20, 2021

  • Test release